HL_5LZD_106

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGG(H2U)G

Length

6 nucleotides

Bulged bases

5LZD|1|y|G|17, 5LZD|1|y|G|18

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_106 not in the Motif Atlas

Homologous match to HL_3W3S_001

Geometric discrepancy: 0.3394

The information below is about HL_3W3S_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_38901.2

Basepair signature

cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

5LZD|1|y|C|15
5LZD|1|y|C|16
5LZD|1|y|G|17
5LZD|1|y|G|18
5LZD|1|y|H2U|19
5LZD|1|y|G|20

Current chains

Chain y

Sec-tRNASec

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA