HL_5LZD_107
3D structure
- PDB id
- 5LZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACUUCA(6IA)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 6IA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZD_107 not in the Motif Atlas
- Homologous match to HL_3W3S_002
- Geometric discrepancy: 0.4689
- The information below is about HL_3W3S_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5LZD|1|y|A|31
5LZD|1|y|C|32
5LZD|1|y|U|33
5LZD|1|y|U|34
5LZD|1|y|C|35
5LZD|1|y|A|36
5LZD|1|y|6IA|37
5LZD|1|y|A|38
5LZD|1|y|U|39
Current chains
- Chain y
- Sec-tRNASec
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain x
- SECIS mRNA
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