HL_5LZD_109

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

G(5MU)(PSU)CGACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_109 not in the Motif Atlas

Homologous match to HL_3RG5_008

Geometric discrepancy: 0.303

The information below is about HL_3RG5_008

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

5LZD|1|y|G|53
5LZD|1|y|5MU|54
5LZD|1|y|PSU|55
5LZD|1|y|C|56
5LZD|1|y|G|57
5LZD|1|y|A|58
5LZD|1|y|C|59
5LZD|1|y|U|60
5LZD|1|y|C|61

Current chains

Chain y

Sec-tRNASec

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain G

50S ribosomal protein L6