HL_5LZS_004

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

5LZS|1|3|C|16, 5LZS|1|3|U|18, 5LZS|1|3|G|19, 5LZS|1|3|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_004 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.1952

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZS|1|3|C|13
5LZS|1|3|A|14
5LZS|1|3|G|15
5LZS|1|3|C|16
5LZS|1|3|U|18
5LZS|1|3|G|19
5LZS|1|3|U|20
5LZS|1|3|A|21
5LZS|1|3|G|22

Current chains

Chain 3

E-site tRNA

Nearby chains

Chain BB

40S ribosomal protein S3a