HL_5LZS_019

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

5LZS|1|5|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_019 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1886

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5LZS|1|5|C|962
5LZS|1|5|G|963
5LZS|1|5|A|964
5LZS|1|5|G|965
5LZS|1|5|A|966
5LZS|1|5|C|967
5LZS|1|5|C|968
5LZS|1|5|C|969
5LZS|1|5|G|970

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain E

60S ribosomal protein L6

Chain F

uL30