HL_5LZS_040

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_040 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1559

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZS|1|5|C|2458
5LZS|1|5|G|2459
5LZS|1|5|A|2460
5LZS|1|5|G|2461
5LZS|1|5|C|2462
5LZS|1|5|G|2463

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37