HL_5LZS_055

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

5LZS|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_055 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.214

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZS|1|5|C|3668
5LZS|1|5|G|3669
5LZS|1|5|C|3670
5LZS|1|5|G|3671
5LZS|1|5|G|3672
5LZS|1|5|C|3673
5LZS|1|5|G|3674

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain G

eL8

Chain N

Ribosomal protein L15