HL_5LZS_072

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_072 not in the Motif Atlas

Homologous match to HL_5TBW_065

Geometric discrepancy: 0.1171

The information below is about HL_5TBW_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZS|1|5|C|4603
5LZS|1|5|G|4604
5LZS|1|5|A|4605
5LZS|1|5|G|4606
5LZS|1|5|A|4607
5LZS|1|5|G|4608

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain ii

Transfer RNA; tRNA

Chain jj

Elongation factor 1-alpha 1

Chain m

eL40