HL_5LZS_074

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5LZS|1|5|G|4694, 5LZS|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_074 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5LZS|1|5|C|4688
5LZS|1|5|U|4689
5LZS|1|5|G|4690
5LZS|1|5|A|4691
5LZS|1|5|A|4692
5LZS|1|5|C|4693
5LZS|1|5|G|4694
5LZS|1|5|C|4695
5LZS|1|5|C|4696
5LZS|1|5|U|4697
5LZS|1|5|C|4698
5LZS|1|5|U|4699
5LZS|1|5|A|4700
5LZS|1|5|A|4701
5LZS|1|5|G|4702

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40