HL_5LZS_088

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_088 not in the Motif Atlas

Geometric match to HL_5TBW_059

Geometric discrepancy: 0.2079

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZS|1|9|U|197
5LZS|1|9|U|198
5LZS|1|9|C|199
5LZS|1|9|G|200
5LZS|1|9|C|201
5LZS|1|9|G|202

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8