HL_5LZS_097

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_097 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1743

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZS|1|9|A|569
5LZS|1|9|C|570
5LZS|1|9|U|571
5LZS|1|9|U|572
5LZS|1|9|U|573
5LZS|1|9|A|574
5LZS|1|9|A|575
5LZS|1|9|A|576
5LZS|1|9|U|577
5LZS|1|9|C|578
5LZS|1|9|C|579
5LZS|1|9|U|580
5LZS|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

eS24