HL_5LZS_113

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_113 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3078

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

5LZS|1|9|C|1460
5LZS|1|9|G|1461
5LZS|1|9|U|1462
5LZS|1|9|U|1463
5LZS|1|9|C|1464
5LZS|1|9|A|1465
5LZS|1|9|G|1466

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain RR

eS17

Chain gg

RACK1