HL_5LZS_117

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUGC

Length

4 nucleotides

Bulged bases

5LZS|1|9|U|1761

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_117 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2872

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5LZS|1|9|G|1760
5LZS|1|9|U|1761
5LZS|1|9|G|1771
5LZS|1|9|C|1772

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain W

uL24