HL_5LZS_120
3D structure
- PDB id
- 5LZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- CCUAACACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZS_120 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1331
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
5LZS|1|ii|C|32
5LZS|1|ii|C|33
5LZS|1|ii|U|34
5LZS|1|ii|A|35
5LZS|1|ii|A|36
5LZS|1|ii|C|37
5LZS|1|ii|A|38
5LZS|1|ii|C|39
5LZS|1|ii|G|40
Current chains
- Chain ii
- tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain PP
- uS19
- Chain XX
- uS12
- Chain ee
- eS30
- Chain hh
- mRNA
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