HL_5LZS_121

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

5LZS|1|ii|C|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_121 not in the Motif Atlas

Homologous match to HL_4TUE_035

Geometric discrepancy: 0.2937

The information below is about HL_4TUE_035

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5LZS|1|ii|G|54
5LZS|1|ii|U|55
5LZS|1|ii|U|56
5LZS|1|ii|C|57
5LZS|1|ii|G|58
5LZS|1|ii|A|59
5LZS|1|ii|A|60
5LZS|1|ii|A|61
5LZS|1|ii|C|62

Current chains

Chain ii

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain jj

Elongation factor 1-alpha 1

Chain t

uL11