HL_5LZS_122

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UGUCCA

Length

6 nucleotides

Bulged bases

5LZS|1|5|U|1179, 5LZS|1|5|C|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZS_122 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3423

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LZS|1|5|U|1177
5LZS|1|5|G|1178
5LZS|1|5|U|1179
5LZS|1|5|C|1180
5LZS|1|5|C|1183
5LZS|1|5|A|1184

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

60S ribosomal protein L5

Chain I

Ribosomal protein L10 (Predicted)