HL_5LZT_019

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

5LZT|1|5|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZT_019 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1969

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5LZT|1|5|C|962
5LZT|1|5|G|963
5LZT|1|5|A|964
5LZT|1|5|G|965
5LZT|1|5|A|966
5LZT|1|5|C|967
5LZT|1|5|C|968
5LZT|1|5|C|969
5LZT|1|5|G|970

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain E

eL6

Chain F

uL30