HL_5LZT_097

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZT_097 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1474

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZT|1|9|A|569
5LZT|1|9|C|570
5LZT|1|9|U|571
5LZT|1|9|U|572
5LZT|1|9|U|573
5LZT|1|9|A|574
5LZT|1|9|A|575
5LZT|1|9|A|576
5LZT|1|9|U|577
5LZT|1|9|C|578
5LZT|1|9|C|579
5LZT|1|9|U|580
5LZT|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain YY

eS24