HL_5LZU_001

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUAGCGGUUAUC

Length

12 nucleotides

Bulged bases

5LZU|1|2|C|16, 5LZU|1|2|G|18, 5LZU|1|2|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_001 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.3483

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

5LZU|1|2|G|12
5LZU|1|2|U|13
5LZU|1|2|A|14
5LZU|1|2|G|15
5LZU|1|2|C|16
5LZU|1|2|G|18
5LZU|1|2|G|19
5LZU|1|2|U|20
5LZU|1|2|U|20|||A
5LZU|1|2|A|21
5LZU|1|2|U|22
5LZU|1|2|C|23

Current chains

Chain 2

P-site tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

uL5

Chain o

eL42