3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GUAGCGGUUAUC
Length
12 nucleotides
Bulged bases
5LZU|1|2|C|16, 5LZU|1|2|G|18, 5LZU|1|2|G|19
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZU_001 not in the Motif Atlas
Homologous match to HL_1SER_001
Geometric discrepancy: 0.3483
The information below is about HL_1SER_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40252.3
Basepair signature
cWW-tSH-cWS-F
Number of instances in this motif group
5

Unit IDs

5LZU|1|2|G|12
5LZU|1|2|U|13
5LZU|1|2|A|14
5LZU|1|2|G|15
5LZU|1|2|C|16
5LZU|1|2|G|18
5LZU|1|2|G|19
5LZU|1|2|U|20
5LZU|1|2|U|20|||A
5LZU|1|2|A|21
5LZU|1|2|U|22
5LZU|1|2|C|23

Current chains

Chain 2
P-site tRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain J
uL5
Chain o
eL42

Coloring options:


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