HL_5LZU_020

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGUCCA

Length

6 nucleotides

Bulged bases

5LZU|1|5|U|1179, 5LZU|1|5|C|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1846

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|U|1177
5LZU|1|5|G|1178
5LZU|1|5|U|1179
5LZU|1|5|C|1180
5LZU|1|5|C|1183
5LZU|1|5|A|1184

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

60S ribosomal protein L5

Chain I

uL16