HL_5LZU_023

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_023 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0776

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZU|1|5|U|1389
5LZU|1|5|G|1390
5LZU|1|5|A|1391
5LZU|1|5|A|1392
5LZU|1|5|G|1393
5LZU|1|5|G|1394

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13

Chain Q

eL18

Chain a

uL15

Chain i

60S ribosomal protein L36