HL_5LZU_032

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

5LZU|1|5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_032 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.0796

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZU|1|5|G|1864
5LZU|1|5|G|1865
5LZU|1|5|U|1866
5LZU|1|5|A|1867
5LZU|1|5|A|1868
5LZU|1|5|G|1869
5LZU|1|5|C|1870

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

uL16