HL_5LZU_038

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_038 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1626

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5LZU|1|5|A|2376
5LZU|1|5|C|2377
5LZU|1|5|G|2378
5LZU|1|5|A|2379
5LZU|1|5|G|2380
5LZU|1|5|A|2381
5LZU|1|5|A|2382
5LZU|1|5|C|2383
5LZU|1|5|U|2384

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31