HL_5LZU_042

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

5LZU|1|5|U|2530, 5LZU|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_042 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1288

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|G|2523
5LZU|1|5|U|2524
5LZU|1|5|U|2525
5LZU|1|5|C|2526
5LZU|1|5|A|2527
5LZU|1|5|G|2528
5LZU|1|5|A|2529
5LZU|1|5|U|2530
5LZU|1|5|C|2531
5LZU|1|5|C|2532

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34