3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GUUCUCUUU
Length
9 nucleotides
Bulged bases
5LZU|1|5|U|2631
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZU_045 not in the Motif Atlas
Homologous match to HL_8C3A_037
Geometric discrepancy: 0.1623
The information below is about HL_8C3A_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01927.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5LZU|1|5|G|2624
5LZU|1|5|U|2625
5LZU|1|5|U|2626
5LZU|1|5|C|2627
5LZU|1|5|U|2628
5LZU|1|5|C|2629
5LZU|1|5|U|2630
5LZU|1|5|U|2631
5LZU|1|5|U|2632

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain R
eL19
Chain U
eL22

Coloring options:


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