HL_5LZU_059

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5LZU|1|5|A|3876, 5LZU|1|5|A|3877, 5LZU|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_059 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.071

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|G|3873
5LZU|1|5|G|3874
5LZU|1|5|G|3875
5LZU|1|5|A|3876
5LZU|1|5|A|3877
5LZU|1|5|C|3878
5LZU|1|5|G|3879
5LZU|1|5|G|3880
5LZU|1|5|G|3881
5LZU|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain e

eL32