HL_5LZU_075

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

5LZU|1|5|A|4910, 5LZU|1|5|A|4911, 5LZU|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_075 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2009

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

5LZU|1|5|C|4906
5LZU|1|5|G|4907
5LZU|1|5|G|4908
5LZU|1|5|A|4909
5LZU|1|5|A|4910
5LZU|1|5|A|4911
5LZU|1|5|G|4912
5LZU|1|5|G|4913
5LZU|1|5|G|4914
5LZU|1|5|G|4915

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13