HL_5LZU_076

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

5LZU|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_076 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.11

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5LZU|1|5|G|4975
5LZU|1|5|U|4976
5LZU|1|5|A|4977
5LZU|1|5|G|4978
5LZU|1|5|A|4979
5LZU|1|5|C|4980
5LZU|1|5|G|4981
5LZU|1|5|A|4982
5LZU|1|5|C|4983

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31