HL_5LZU_090

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_090 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3871

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5LZU|1|9|G|377
5LZU|1|9|U|378
5LZU|1|9|C|379
5LZU|1|9|G|380
5LZU|1|9|C|381
5LZU|1|9|C|382
5LZU|1|9|G|383
5LZU|1|9|U|384
5LZU|1|9|G|385
5LZU|1|9|C|386
5LZU|1|9|C|387

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain LL

uS17