HL_5LZU_096

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZU_096 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1535

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZU|1|9|A|569
5LZU|1|9|C|570
5LZU|1|9|U|571
5LZU|1|9|U|572
5LZU|1|9|U|573
5LZU|1|9|A|574
5LZU|1|9|A|575
5LZU|1|9|A|576
5LZU|1|9|U|577
5LZU|1|9|C|578
5LZU|1|9|C|579
5LZU|1|9|U|580
5LZU|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

eS24