HL_5LZV_091

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_091 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3854

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LZV|1|9|G|377
5LZV|1|9|U|378
5LZV|1|9|C|379
5LZV|1|9|G|380
5LZV|1|9|C|381
5LZV|1|9|C|382
5LZV|1|9|G|383
5LZV|1|9|U|384
5LZV|1|9|G|385
5LZV|1|9|C|386
5LZV|1|9|C|387

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

eS8

Chain LL

uS17