HL_5LZV_097

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_097 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1547

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZV|1|9|A|569
5LZV|1|9|C|570
5LZV|1|9|U|571
5LZV|1|9|U|572
5LZV|1|9|U|573
5LZV|1|9|A|574
5LZV|1|9|A|575
5LZV|1|9|A|576
5LZV|1|9|U|577
5LZV|1|9|C|578
5LZV|1|9|C|579
5LZV|1|9|U|580
5LZV|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain YY

eS24