HL_5LZV_119

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGUCCA

Length

6 nucleotides

Bulged bases

5LZV|1|5|U|1179, 5LZV|1|5|C|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_119 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3661

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LZV|1|5|U|1177
5LZV|1|5|G|1178
5LZV|1|5|U|1179
5LZV|1|5|C|1180
5LZV|1|5|C|1183
5LZV|1|5|A|1184

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

uL18

Chain I

uL16