HL_5LZV_124

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZV_124 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3941

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LZV|1|9|A|1113
5LZV|1|9|U|1114
5LZV|1|9|U|1115
5LZV|1|9|C|1116
5LZV|1|9|C|1117
5LZV|1|9|C|1118
5LZV|1|9|A|1119
5LZV|1|9|U|1120

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain bb

eS27