HL_5LZW_008

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UAACCA

Length

6 nucleotides

Bulged bases

5LZW|1|5|C|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_008 not in the Motif Atlas

Homologous match to HL_5TBW_002

Geometric discrepancy: 0.0968

The information below is about HL_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5LZW|1|5|U|68
5LZW|1|5|A|69
5LZW|1|5|A|70
5LZW|1|5|C|71
5LZW|1|5|C|72
5LZW|1|5|A|73

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13

Chain N

eL15

Chain a

uL15

Chain i

eL36