HL_5LZW_015
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 5LZW|1|5|G|315, 5LZW|1|5|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZW_015 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.2681
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
5LZW|1|5|G|314
5LZW|1|5|G|315
5LZW|1|5|U|316
5LZW|1|5|A|317
5LZW|1|5|A|318
5LZW|1|5|A|319
5LZW|1|5|C|320
5LZW|1|5|U|321
5LZW|1|5|C|322
5LZW|1|5|C|323
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain i
- eL36
- Chain o
- eL42
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