HL_5LZW_043

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

5LZW|1|5|U|2530, 5LZW|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_043 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.129

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZW|1|5|G|2523
5LZW|1|5|U|2524
5LZW|1|5|U|2525
5LZW|1|5|C|2526
5LZW|1|5|A|2527
5LZW|1|5|G|2528
5LZW|1|5|A|2529
5LZW|1|5|U|2530
5LZW|1|5|C|2531
5LZW|1|5|C|2532

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34