HL_5LZW_060

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5LZW|1|5|A|3876, 5LZW|1|5|A|3877, 5LZW|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_060 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0618

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZW|1|5|G|3873
5LZW|1|5|G|3874
5LZW|1|5|G|3875
5LZW|1|5|A|3876
5LZW|1|5|A|3877
5LZW|1|5|C|3878
5LZW|1|5|G|3879
5LZW|1|5|G|3880
5LZW|1|5|G|3881
5LZW|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain e

eL32