HL_5LZW_073

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_073 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.1212

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZW|1|5|C|4603
5LZW|1|5|G|4604
5LZW|1|5|A|4605
5LZW|1|5|G|4606
5LZW|1|5|A|4607
5LZW|1|5|G|4608

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain ii

Pelota

Chain jj

Hbs1l

Chain m

eL40