HL_5LZW_078

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

5LZW|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_078 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.114

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5LZW|1|5|G|4975
5LZW|1|5|U|4976
5LZW|1|5|A|4977
5LZW|1|5|G|4978
5LZW|1|5|A|4979
5LZW|1|5|C|4980
5LZW|1|5|G|4981
5LZW|1|5|A|4982
5LZW|1|5|C|4983

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31