HL_5LZW_092

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

5LZW|1|9|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_092 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3828

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LZW|1|9|G|377
5LZW|1|9|U|378
5LZW|1|9|C|379
5LZW|1|9|G|380
5LZW|1|9|C|381
5LZW|1|9|C|382
5LZW|1|9|G|383
5LZW|1|9|U|384
5LZW|1|9|G|385
5LZW|1|9|C|386
5LZW|1|9|C|387

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

eS8

Chain LL

uS17