HL_5LZW_095

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5LZW|1|9|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_095 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1781

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5LZW|1|9|C|462
5LZW|1|9|C|463
5LZW|1|9|A|464
5LZW|1|9|A|465
5LZW|1|9|G|466
5LZW|1|9|G|467

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

eS6

Chain V

uL14

Chain jj

Hbs1l