HL_5LZW_098

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZW_098 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1609

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZW|1|9|A|569
5LZW|1|9|C|570
5LZW|1|9|U|571
5LZW|1|9|U|572
5LZW|1|9|U|573
5LZW|1|9|A|574
5LZW|1|9|A|575
5LZW|1|9|A|576
5LZW|1|9|U|577
5LZW|1|9|C|578
5LZW|1|9|C|579
5LZW|1|9|U|580
5LZW|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain YY

eS24