HL_5LZX_024

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGCG

Length

4 nucleotides

Bulged bases

5LZX|1|5|C|1411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_024 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3163

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5LZX|1|5|C|1406|||B
5LZX|1|5|G|1406|||C
5LZX|1|5|C|1411
5LZX|1|5|G|1411|||A

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain b

eL29