HL_5LZX_031

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

5LZX|1|5|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_031 not in the Motif Atlas

Geometric match to HL_5TBW_023

Geometric discrepancy: 0.2918

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LZX|1|5|C|1763
5LZX|1|5|G|1764
5LZX|1|5|A|1765
5LZX|1|5|A|1766
5LZX|1|5|A|1767
5LZX|1|5|C|1768
5LZX|1|5|G|1769

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain SS

uS13