HL_5LZX_039

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_039 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1694

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5LZX|1|5|A|2376
5LZX|1|5|C|2377
5LZX|1|5|G|2378
5LZX|1|5|A|2379
5LZX|1|5|G|2380
5LZX|1|5|A|2381
5LZX|1|5|A|2382
5LZX|1|5|C|2383
5LZX|1|5|U|2384

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31