HL_5LZX_043

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

5LZX|1|5|U|2530, 5LZX|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_043 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1271

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZX|1|5|G|2523
5LZX|1|5|U|2524
5LZX|1|5|U|2525
5LZX|1|5|C|2526
5LZX|1|5|A|2527
5LZX|1|5|G|2528
5LZX|1|5|A|2529
5LZX|1|5|U|2530
5LZX|1|5|C|2531
5LZX|1|5|C|2532

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34