HL_5LZX_044

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_044 not in the Motif Atlas

Geometric match to HL_7RQB_020

Geometric discrepancy: 0.1277

The information below is about HL_7RQB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5LZX|1|5|C|2561
5LZX|1|5|G|2562
5LZX|1|5|C|2563
5LZX|1|5|G|2564
5LZX|1|5|A|2565
5LZX|1|5|G|2566

Current chains

Chain 5

28S ribosomal RNA

Nearby chains