HL_5LZX_046

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

5LZX|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_046 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.148

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5LZX|1|5|G|2624
5LZX|1|5|U|2625
5LZX|1|5|U|2626
5LZX|1|5|C|2627
5LZX|1|5|U|2628
5LZX|1|5|C|2629
5LZX|1|5|U|2630
5LZX|1|5|U|2631
5LZX|1|5|U|2632

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain U

eL22