HL_5LZX_073

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZX_073 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.0944

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5LZX|1|5|C|4603
5LZX|1|5|G|4604
5LZX|1|5|A|4605
5LZX|1|5|G|4606
5LZX|1|5|A|4607
5LZX|1|5|G|4608

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain ii

Protein pelota homolog

Chain jj

HBS1-like protein

Chain m

eL40